Reads helices from stdin and sequence from input file, computes a set of disjoint base pairs, and writes the corresponding helices to stdout.
1 10 2 2 21 6 11 29 2 14 27 2
2 21 6 13 28 3
cat PKB00001.delta.hx | ./is.exe PKB00001.seq > PKB00001.delta.is.hx