Screenshots
Each screenshot is followed by three sequences
- RNA bases
- turn directions
- dot-brackets of secondary structure,
and links to two files
- lattice conformation seq2
- base pairs bp.
The screenshot can be reproduced using the command
./show.exe -i [filename].seq2 -i2 [filename].bp
PKB00001
AGGGGGGACUUAGCGCCCCCCAAACCGUA
UWVZyZyUWYuxwvXWYzwwywZVVVWV
:[[[[[[:::::(((]]]]]]::::))):
PKB00071
UGUGCGUUUCCAUUUGAGUAUCCUGAAAACGGGCUUUUCA
GCAUGGAACGUACAUAUUAAAUAGUAGGAGUGCAUAGUGG
CCCGUAUAGCAGGCAUUAACAUUCCUGA
WUUXWWXYuwvXUUWXvywZyZZWXyZxwzuuuxYYuXuY
zWVVZUwZwxwuuzvyyvzXUWXWYVUVZZxUXwvxZXUv
yUyUUYVYzuzzxuwuwxuVYYXvyUx
(((((((:(((((::::::::[[[[::::[[[[::::{{{
{:))))))))))))::::::::::::::::::::::::::
]]]]:::::]]]]:::::::::::}}}}
PKB00134
AGGUGCCUUUGAGAGUUACUCUUUGCUCUCUUCGGAAGAA
CCCUUAGGGGUUCGUGCAUGGGCUUGCAUAGCAAGUCUUA
GAAUGCGGGUACCGUACAGUGUUGAAAAACACUGUAAAUC
UCUAAAAGAGA
UyXWVWXyvwZxyxxYxZyUzvvYXYXYWZZWXzXzuyXX
WYxxYXvywxxVYuYUWWxzzzXuzuvyWYVZUZxZZZUX
vwxuwyxwvvxxuwxwuxxYVxVZXXzvyyXvXWUvyUZU
XUVVVVZuxW
:(((((((::((((((::[[[[[[)))))):::::::(((
(((::::))))))::(((((((((((:::::)))))))::
::))))))))))):((((((((::::::))))))))::::
::::]]]]]]:
Switch 1
GGCCCCUUUGGGGGCCAGACCCCUAAAGGGGUC
vwvXWYWWUXzzXXYvwZxZZxYuwwyxwVVV
((((((((((((((:::::))))))))))))))
Switch 2
GGCCCCUUUGGGGGCCAGACCCCUAAAGGGGUC
YzuzXUvwVuZZUWyUyvXzuuxYXVyXUZZV
(((((([[[:)))))):((((((:]]]))))))
_
